Defense highlights computer trouble in DNA analysis

3:47 p.m. PST: The computer used to analyze DNA data from a hair found attached to
pliers in Scott Peterson’s boat malfunctioned four times during the test, but the glitches
did not impact the results, an FBI expert testified Wednesday.


Bruce Budowle refused in court to call the glitches “problems,” saying the process
was simply re-run and produced valid results.


Budowle, on the stand for most of the seventh day of testimony in Peterson’s preliminary
hearing on double murder charges, had testy exchanges with defense attorney
Mark Geragos, sometimes sparring over word definitions.

“When the machine malfunctions is that a problem?” Geragos asked.
“It depends on what you mean by problem,” Budowle said.

“It didn’t work,” Geragos said.

Budowle responded that the machine ultimately did work and produce valid results.

Those results showed the hair did not come from Scott Peterson but could have come
from his wife, Laci, FBI analyst Constance L. Fisher testified earlier.


The hair could be a key piece of physical evidence linking Laci Peterson to the boat her
husband said he took fishing on the day she was reported missing. Scott Peterson told police
he returned home from fishing in San Francisco Bay to find his wife gone last Christmas Eve.


Her body and that of her son were found in April along the bay’s eastern shore, a few
miles from where Scott Peterson said he went fishing.


The defense is trying to show that mitochondrial DNA testing, which the FBI used on the
hair, is a unreliable scientific technique and should be excluded from court.


Geragos took aim Wednesday at potential sample contamination. Budowle testified that
contamination occurs, but said FBI validation studies show that contamination rates of
10 percent or less do not affect the outcome of the testing.


Under cross examination by Geragos, Budowle testified that for the more common
nuclear DNA testing, there is no accepted contamination rate. Unlike nuclear DNA, which
can be used as a unique identifier, mitochondrial DNA testing can only rule the sample
came from certain people.  Typically all members of a maternal family line have the
same mitochondrial DNA, experts have testified.


Wednesday’s testimony was marked by sometimes tense exchanges between Geragos and
Budowle, who twice said the attorney had “thrown a lot of things in there and mixed
apples and oranges.” Peterson, wearing a gray suit, appeared to be looking over
transcripts of testimony in the case as Geragos questioned Budowle.


After one rapid exchange the court reporter asked Budowle to repeat his statement.

“I said, ‘We can argue back and forth,’” Budowle said, adding to the court reporter,
“You want to get that in.”


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PRELIMINARY HEARING - DAY 7
Continued Questioning of BRUCE BUDOWLE - FBI